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Quick Links
- Transcript assembly of RNA-seq reads: CLASS [Publication,Instructions,Code]
- Alternative splicing events from RNA-seq: ASprofile [Instructions,Code]
- RNA editing from RNA-seq: rddChecker [Instructions,Code]
- Cross-species spliced alignment: Sim4cc [Publication,Code] and Sim4db [Publication,Instructions,Code]
- Gene structure comparison: GenComp [Publication, Code]
- Bacterial alignment visualization: Enterix [Publications]
- Mathematically optimal spaced seeds [Publications,Code]
- Alternative splicing and Evolution [References]
- High-throughput cDNA-to-genome alignment: ESTmapper [Publication, Code]
- Gene and alternative splicing annotation: AIR [Publication, Code]
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